# Tcl autoload index file, version 2.0
# This file is generated by the "auto_mkindex" command
# and sourced to set up indexing information for one or
# more commands.  Typically each line is a command that
# sets an element in the auto_index array, where the
# element name is the name of a command and the value is
# a script that loads the command.

set auto_index(AtomSpec) "source $dir/AtomSpec.tcl"
set auto_index(AtomsInObjects) "source $dir/AtomsInObjects.tcl"
set auto_index(EnergyAnalysis) "source $dir/EnergyAnalysis.tcl"
set auto_index(_InteractionEnergyAnalysis) "source $dir/EnergyAnalysis.tcl"
set auto_index(_EnergyAnalysis) "source $dir/EnergyAnalysis.tcl"
set auto_index(GeometricSubset) "source $dir/GeometricSubset.tcl"
set auto_index(MC_minimizeSetIpcVrs) "source $dir/MC_docking.tcl"
set auto_index(MC_minimize) "source $dir/MC_docking.tcl"
set auto_index(get_subset_center_axes) "source $dir/MC_docking.tcl"
set auto_index(recenter_and_rotate) "source $dir/MC_docking.tcl"
set auto_index(stop_search) "source $dir/MC_docking.tcl"
set auto_index(SetIpcARCdynamicsVars) "source $dir/MC_docking.tcl"
set auto_index(ARCdynamics) "source $dir/MC_docking.tcl"
set auto_index(ARCminimize) "source $dir/MC_docking.tcl"
set auto_index(SA_minimizeSetIpcVrs) "source $dir/SA_docking.tcl"
set auto_index(SA_minimize) "source $dir/SA_docking.tcl"
set auto_index(SetIpcARC_SAVars) "source $dir/SA_docking.tcl"
set auto_index(ARC_SA) "source $dir/SA_docking.tcl"
set auto_index(ARC_fixedminimize) "source $dir/SA_docking.tcl"
set auto_index(SortArcEner) "source $dir/SA_docking.tcl"
set auto_index(efield) "source $dir/efield.tcl"
set auto_index(efield_off) "source $dir/efield.tcl"
set auto_index(apply_efield) "source $dir/efield.tcl"
set auto_index(stiffness) "source $dir/elastic.tcl"
set auto_index(stiffness_cpt) "source $dir/elastic.tcl"
set auto_index(Utility_CastHessianMatrix) "source $dir/energyAtom.tcl"
set auto_index(Energy_ConvertSystemAtomNumbers) "source $dir/energyAtom.tcl"
set auto_index(Energy_GetCoord) "source $dir/energyAtom.tcl"
set auto_index(Energy_GetGradient) "source $dir/energyAtom.tcl"
set auto_index(Energy_GetHessian) "source $dir/energyAtom.tcl"
set auto_index(grSizes) "source $dir/getAtoms.tcl"
set auto_index(getBondAtoms) "source $dir/getAtoms.tcl"
set auto_index(getAngleAtoms) "source $dir/getAtoms.tcl"
set auto_index(getTorsionAtoms) "source $dir/getAtoms.tcl"
set auto_index(mopacConnect) "source $dir/mopac.tcl"
set auto_index(mopacDisconnect) "source $dir/mopac.tcl"
set auto_index(random) "source $dir/randomNumber.tcl"
set auto_index(readSiz) "source $dir/sizFile.tcl"
set auto_index(readSizToObjects) "source $dir/sizFile.tcl"
set auto_index(readSizToAssociativeArray) "source $dir/sizFile.tcl"
set auto_index(axis_restraint) "source $dir/srforc.tcl"
set auto_index(apply_axis_restraint) "source $dir/srforc.tcl"
set auto_index(axis_restraint_off) "source $dir/srforc.tcl"
set auto_index(twod_restraint) "source $dir/srforc.tcl"
set auto_index(twod_restraint_off) "source $dir/srforc.tcl"
set auto_index(apply_surface_restraint) "source $dir/srforc.tcl"
set auto_index(S) "source $dir/srforc.tcl"
set auto_index(surface_restraint_axis) "source $dir/srforc.tcl"
set auto_index(System_SelectAtom) "source $dir/systemAtom.tcl"
set auto_index(System_GetFullAtomPath) "source $dir/systemAtom.tcl"
set auto_index(System_GetUniqueAtomTypes) "source $dir/systemAtom.tcl"
set auto_index(System_SetGlobal) "source $dir/systemAtom.tcl"
set auto_index(System_AddAtom) "source $dir/systemAtom.tcl"
set auto_index(System_ChangeAtom) "source $dir/systemAtom.tcl"
set auto_index(System_SetExcludeInternalEnergy) "source $dir/systemAtom.tcl"
set auto_index(System_SetExcludeNonbondEnergy) "source $dir/systemAtom.tcl"
set auto_index(System_ConvertEnergyAtomNumbers) "source $dir/systemAtom.tcl"
set auto_index(systemSpec) "source $dir/systemSpec.tcl"
set auto_index(atomSpec) "source $dir/systemSpec.tcl"
set auto_index(printBonds) "source $dir/systemSpec.tcl"
set auto_index(printAngles) "source $dir/systemSpec.tcl"
set auto_index(printTorsions) "source $dir/systemSpec.tcl"
set auto_index(printOops) "source $dir/systemSpec.tcl"
set auto_index(getBondAtoms) "source $dir/systemSpec.tcl"
set auto_index(getAngleAtoms) "source $dir/systemSpec.tcl"
set auto_index(getTorsionAtoms) "source $dir/systemSpec.tcl"
set auto_index(getOopAtoms) "source $dir/systemSpec.tcl"
set auto_index(generate3numberCombosOf_N) "source $dir/systemSpec.tcl"
